Pollutants We Put into Our Environment

We may not realize how much we change the environment that we live in. People introduce a large amount of waste and pollutants into the world. We all are aware that we produce trash and that it go into the landfills, however have you ever considered how the wastewater that you produce is cleaned and put into the rivers and oceans around you, or how taking medications can introduce new chemicals into the environment? What about how heavy metals produced from factories and petroleum products are dealt with? Below is our interactive and informative thinglink to learn more.

Contaminant Biodegradation #2

Link:  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507529/

Citation: Santisi, S., S. Cappello, M. Catalfamo, G. Mancini, M. Hassanshahian, L. Genovese, L. Giuliano, M. Yakimov. 2015. Biodegradation of crude oil by individual bacteria strains and a mixed bacterial consortium. Brazilian Journal of Microbiology 46: 377-387.

Abstract:

Three bacterial isolates identified as  Alcanivorax borkumensis  SK2,  Rhodococcus erythropolis  HS4 and  Pseudomonas stutzeri  SDM, based on 16S rRNA gene sequences, were isolated from crude oil enrichments of natural seawater. Single strains and four bacterial consortia designed by mixing the single bacterial cultures respectively in the following ratios: (Alcanivorax: Pseudomonas, 1:1), (Alcanivorax:  Rhodococcus,  1:1), (Pseudomonas:  Rhodococcus, 1:1), and (Alcanivorax:  Pseudomonas:  Rhodococcus, 1:1:1), were analyzed in order to evaluate their oil degrading capability. All experiments were carried out in microcosms systems containing seawater (with and without addition of inorganic nutrients) and crude oil (unique carbon source). Measures of total and live bacterial abundance, Card-FISH and quali-, quantitative analysis of hydrocarbons (GC-FID) were carried out in order to elucidate the co-operative action of mixed microbial populations in the process of biodegradation of crude oil. All data obtained confirmed the fundamental role of bacteria belonging to  Alcanivorax  genus in the degradation of linear hydrocarbons in oil polluted environments.

Justification:

I find biodegradation of oil fascinating because before learning about it in general Microbiology I had no idea that microbes had the ability to break down such a harsh substance such as oil. I think it is relevant for us to learn about because we live in Alaska, where oil is being extracted and has the potential to have oil spills.

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It’s More than just Rotten Eggs, It’s the Sulfur Cycle!

The sulfur cycle is made up of 4 steps: mineralization, oxidation, reduction and incorporation.  Sulfur is one of the main constituents of many proteins, vitamins and hormones. Sulfur is   often found in oxidation states that can range from Sulfates to In the soil environment, sulfur can be produced in either an organic or inorganic form. The sulfur cycle contains both atmospheric and terrestrial processes. In the inside of the terrestrial portion, the cycle begins with the weathering of rocks, which is what releases the stored sulfur. It is imperative to learn about how exactly the sulfur undergoes mineralization in the sulfur cycle. For this case, sulfur is mainly cycled throughout the soil environment and sea water in the marine environment.
Oxidation is the process of losing an electron from an element or compound. In the sulfur cycle there is a sulfide oxidation and a sulfur oxidation, each of these processes are performed by microbes in anaerobic environments such as a hotspring.  Sulfate reduction is a process carried out by anaerobic microbes which transforms sulfate into sulfide. These microbes are a diverse and varied group both genetically and physiologically, and are typically found in aquatic environments, where they act as decomposers. However, they are also present in great numbers within sulfur springs, such as those in Yellowstone, where sulfate is abundant and continually replenished. Incorporation involves the process of changing sulfide into organic compounds. This can include metal-containing derivatives. Microorganisms have the ability to immobilize sulfur compounds, which ultimately results in subsequent incorporation of these sulfur compounds into the organic form of sulfur.. The sulfur cycle is important because of how abundant it is in our environment. Take a look at our interactive coggle to learn about each of these parts more in depth.

Scavenger Hunt-Find the answers to the following questions in the coggle

  1. What is one practical application for sulfate reducers?
  2. Where does oxidation in the environment occur?
  3. What exactly would happen to sulfide if it were to be incorporated after oxidation and reduction?
  4. What are the three major processes that control the amount of sulfate in the oceans?

Scavenger Hunt Answers click here

To go to the coggle click here  

Collaborators: Kirsten Veech, Connor Ito, Alisa Thiede, Zachary Snelson

Biodegradation nomination

Link:  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507529/

Citation: Santisi, S., S. Cappello, M. Catalfamo, G. Mancini, M. Hassanshahian, L. Genovese, L. Giuliano, M. Yakimov. 2015. Biodegradation of crude oil by individual bacteria strains and a mixed bacterial consortium. Brazilian Journal of Microbiology 46: 377-387.

Abstract:

Three bacterial isolates identified as  Alcanivorax borkumensis  SK2,  Rhodococcus erythropolis  HS4 and  Pseudomonas stutzeri  SDM, based on 16S rRNA gene sequences, were isolated from crude oil enrichments of natural seawater. Single strains and four bacterial consortia designed by mixing the single bacterial cultures respectively in the following ratios: (Alcanivorax: Pseudomonas, 1:1), (Alcanivorax:  Rhodococcus,  1:1), (Pseudomonas:  Rhodococcus, 1:1), and (Alcanivorax:  Pseudomonas:  Rhodococcus, 1:1:1), were analyzed in order to evaluate their oil degrading capability. All experiments were carried out in microcosms systems containing seawater (with and without addition of inorganic nutrients) and crude oil (unique carbon source). Measures of total and live bacterial abundance, Card-FISH and quali-, quantitative analysis of hydrocarbons (GC-FID) were carried out in order to elucidate the co-operative action of mixed microbial populations in the process of biodegradation of crude oil. All data obtained confirmed the fundamental role of bacteria belonging to  Alcanivorax  genus in the degradation of linear hydrocarbons in oil polluted environments.

Justification:

I find biodegradation of oil fascinating because before learning about it in general Microbiology I had no idea that microbes had the ability to break down such a harsh substance such as oil. I think it is relevant for us to learn about because we live in Alaska, where oil is being extracted and has the potential to have oil spills.

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Wastewater treatment journal discussion

https://www.sciencedirect.com/science/article/pii/004313549400195D

P.N. Lens, Poorter, M., Cronenberg, C., Verstraete, W. 1995. Sulfate reducing and methane producing bacteria in aerobic wastewater treatment systems. Elsevier 29:871-880.

A selection of aerobic biofilm reactors and activated sludge plants were investigated for the presence of methane producing bacteria (MPB) and sulfate reducing bacteria (SRB). Detection tests showed that acetotrophic and hydrogenotrophic MPB as well as lactate, acetate and propionate oxidizing SRB were present in all reactor types investigated, except in an activated sludge reactor aerated with pure oxygen. Methane production rates from acetate by biomass samples of aerobic reactors were less than 1% of the rates measured in anaerobic UASB sludge. The presence of SRB was independent of the reactor configuration, the organic loading and the influent sulfate concentration. Aerobic biofilms growing in a trickling filter packed with plastic carrier and in a rotating biological contactor contained between 5.7 × 107  to 1.1 × 108  CFU/g VS of lactate oxidizing SRB and showed a potential sulfate reduction rate using lactate as electron donor of about 10 mg SO2−4/g VS ·h. The latter is comparable to the values found in sludges from typical anaerobic wastewater treatment reactors. In activated sludges, SRB densities were some 103  time lower and the maximum sulfate reduction rate was  ca  3 times lower compared to the aerobic biofilm reactors. In biofilms, high sulfate reduction rates, in combination with the high sulfide removal rates (11.6 to 131.7 mg HS−/g VS ·h) suggest that  in situ  reoxidation of sulfide might sustain the SRB population. The SRB enumeration, together with activity and oxygen microprofile measurements showed that the biomass of aerobic wastewater treatment systems can serve as inoculum or as site for a wide spectrum of redox related biotransformation processes.

I chose this paper because I would like to learn more about how methane contributes to greenhouse gases. I think that both methane and greenhouse effects are super interesting. I was also surprised to see how the distribution of greenhouse gases in the diagram shown in class on Monday and wanted to learn more about it.

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Microorganisms in the Mouth-Individual Thinglink Communities Project Post

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768665/

Summaries

General Audience:

We all know that it is important to brush our teeth, but did you know that even with excellent hygiene there is still an estimated 500,000 bacteria on each tooth? This may sound alarming and maybe even concerning, but don’t worry because most of the bacteria that are in your mouth cause no harm and some even have a beneficial effect. The first bacteria were viewed by Antonie Van Leeuwenhoek in 1683. He took cells from his cheek and examined the sample under his homemade microscope (Avila et al. 2008). As previously mentioned microorganisms can have a wide variety of relationships with its host. In the oral microbiome most cells either don’t affect its host or can be helpful, however there are cases where bacteria can be pathogenic and dangerous to its host, often times causing disease. The exact trigger of what causes bacteria to go from having no effect to being dangerous is unknown, however there are two main theories. Theory one says that the bacteria associated with a host present in the mouth have always been in the pathogenic state but have been outnumbered by non-harmful bacteria and never had the opportunity to grow, until they did. Theory two says that the bacteria change due to an environmental change.  There is currently an estimated 750 unknown microbial cells living in the human mouth waiting to be discovered but studying the oral microbiome is challenging because it is difficult to replicate the environment accurately. There is however a technique for studying the microorganisms in the mouth called metagenomics. This process is able to analyze large amounts of microbial families. Metagenomic sequencing is much faster and more accurate than grow individual communities to study. Previous studies have found a positive health correlation between a high concentration of P. gingivalis, Tannerella forsythia, and Actinobacillus in healthy mouths. Knowing the microorganisms that inhabit a person’s mouth is crucial for understanding what interactions are taking place and can lead to improving medical and health practices.  

 

Scientists/engineers:

There is the same amount of prokaryotic organisms living in/on a person as the amount of eukaryotic cells that make up the human body. There are many different types of cells in the human oral microbiome, some are commensal, some are beneficial and some are pathogenic. Studies are currently looking at why cells become pathogenic and have come up with two theories. The first one theorizes that certain host associated cells in the oral environment have always been pathogenic, however they were overpopulated by commensal cells and were held at bay until they had the opportunity to grow. The second theory states that an environmental change occurs which triggers the bacteria the change into pathogenic cells. Since the oral microbiome is extremely difficult to replicate, studying the environment and cells that live in it can be challenging. However metagenomic sequencing has made a large difference in the ability to identify large communities of microbes at once. This is much more accurate and time efficient than isolating the different microorganisms. Isolating individual microbes can also be challenging since only a small amount will show up on swab plates. Studies previously performed have found a correlation between people with good hygiene and a healthy microbiome, having high concentrations of P. gingivalis, Tannerella forsythia, and actinobacillus. There is still so much to be discovered about the human oral microbiome, there is an estimated additional 750 host associated microbial cells yet to be discovered in the human mouth.

Biogeochemical cycling article suggestion

https://www.sciencedirect.com/science/article/pii/0016703780900459

Martens, C., J. Val Klump. 1979. Biogeochemical cycling in an organic-rich coastal marine basin-I. Methane sediment-water exchange processes. Elsevier 44:471-490.

I chose this article because I was very interested in seeing how methane affects the earth, especially since it is being released more and more due to the thawing of permafrost. I was also very intrigued when we learned about the frozen methane bubbles in the lakes during one of our earlier lectures. After learning a little bit about methane in cold environments, such as Fairbanks, I thought it would be interesting to compare it to a warmer environment which this article does. It takes a look at how methane is produced through different mechanisms in bodies of water in North Carolina. I thought this would be interesting because the temperature changes in North Carolina aren’t nearly as extreme and the changes in Fairbanks, so I was interested in learning if the difference in temperature made a difference.

Abstract

Methane produced in anoxic organic-rich sediments of Cape Lookout Bight, North Carolina, enters the water column via two seasonally dependent mechanisms: diffusion and bubble ebullition. Diffusive transport measured  in situ  with benthic chambers averages 49 and 163 μmol · m  âˆ’2   · hr  âˆ’1  during November—May and June—October respectively. High summer sediment methane production causes saturation concentrations and formation of bubbles near the sediment-water interface. Subsequent bubble ebullition is triggered by low-tide hydrostatic pressure release. June—October sediment-water gas fluxes at the surface average 411 ml (377 ml STP: 16.8 mmol) · m−2  per low tide. Bubbling maintains open bubble tubes which apparently enhance diffusive transport. When tubes are present, apparent sediment diffusivities are 1.2—3.1-fold higher than theoretical molecular values reaching a peak value of 5.2 × 10−5  cm2   · sec−1. Dissolution of 15% of the rising bubble flux containing 86% methane supplies 170μmol · m−2   · hr−1  of methane to the bight water column during summer months; the remainder is lost to the troposphere. Bottom water methane concentration increases observed during bubbling can be predicted using a 5—15 μm stagnant boundary layer dissolution model. Advective transport to surrounding waters is the major dissolved methane sink: aerobic oxidation and diffusive atmospheric evasion losses are minor within the bight.

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Environmental Microbiology Introduction Post

Hello,

My name is Kirsten, I was born and raised in Alaska with the exception of moving to the Philippines from 2003-2005. This is my 4th year attending UAF and I am majoring in Biology with a concentration in physiology and a minor in Business Management and Organizations. My career goal is to become an Orthodontist with my own practice. Some of my interests include hiking, fishing, working (yes, I know this sounds crazy but I absolutely love working in the dental office) and traveling. Over winter break I got to travel to Hong Kong, Singapore, Phuket,Thailand, Bangkok,Thailand , and Saigon,Vietnam and I really loved getting to see the different lifestyles of people around the world.

My Environmental Microbiology Haiku

Often out of sight

Microbes are everywhere

Constantly working